Codex, Plugin
Deepbiology Lab
Shared DeepBiology genomics skills and MCP tools for Antigravity CLI.
Compatibility: Not stated.
Grade C
One Medium finding. Read the findings before installing.
Not a guarantee. A hygiene check of the source at the commit shown, not a security audit.
Rescanned at commit a960bb51f252, unchanged since the check below.
NETWORK_HOST_FROM_INPUT
Why this grade
- NETWORK_HOST_FROM_INPUT Medium
A file takes a URL or endpoint as input and has no fixed host list.
deepbiology_q1_cd34_kasumi1.sh, line 27
# - curl and jq must be installed
Any High, or two or more Medium findings, give D. One Medium gives C. Low findings or a security Note give B. Each code names a finding behind the letter.
If you think this grade is wrong, email [email protected] with the entry link and your evidence. We aim to acknowledge within two working days and decide within seven. If we confirm an error, we aim to correct it within 24 hours of confirming it. These are aims, not guarantees.
Grades are a hygiene check of the source at the commit shown, on the date checked, not a security audit or a guarantee. The free directory grades are automated. Before release, a PlugVet engineer reviews every paid report and any grade we hold back, including all F grades, against the source code and the evidence we quote.
What was checked
Plain notes from the hygiene checks.
Permissions
Concern
can delete files.
PERMISSION_DELETE_FILES
scripts/sync_plugin_skills.py, line 35
shutil.rmtree(TARGET)
Install and update
Note
The docs document an installer that pipes a download into a shell.
INSTALL_DOCUMENTED_INSTALLER
scripts/install.sh, line 6
# curl -fsSL https://raw.githubusercontent.com/DeepBiology/deepbiology-lab/main/scripts/install.sh | sh
Network
Serious
accepts a host from input, with no fixed list in this file.
NETWORK_HOST_FROM_INPUT
deepbiology_q1_cd34_kasumi1.sh, line 27
# - curl and jq must be installed
deepbiology_q1_cd34_kasumi1.sh, line 38
# Write curl header file to avoid exposing the bearer token in process lists
deepbiology_q1_cd34_kasumi1.sh, line 108
INIT_RESPONSE=$(curl -s "${MCP_URL}" \
Show more
deepbiology_q1_cd34_kasumi1.sh, line 143
TOOLS_RESPONSE=$(curl -s "${MCP_URL}" \
deepbiology_q1_cd34_kasumi1.sh, line 173
SUBMIT_RESPONSE=$(curl -s "${MCP_URL}" \
deepbiology_q1_cd34_kasumi1.sh, line 236
STATUS_RESPONSE=$(curl -s "${MCP_URL}" \
deepbiology_q1_cd34_kasumi1.sh, line 289
RESULT_RESPONSE=$(curl -s "${MCP_URL}" \
codex-plugin-python/scripts/query.py, line 99
resp = requests.post(
deepbiology/client.py, line 166
response = requests.get(image["storageSignedUrl"], timeout=120)
Dockerfile, line 39
CMD ["python", "-c", "import urllib.request; response = urllib.request.urlopen('http://127.0.0.1:8000/healthz', timeout=2); assert response.status == 200; response.close()"]
Secrets
Concern
reads a credential or environment file.
SECRETS_ENV_READ SECRETS_PATH_DOTENV
test_client.py, line 92
parser.add_argument("--api-key", default=os.environ.get("DEEPBIOLOGY_API_KEY"), help="DeepBiology API key")
codex-plugin-python/scripts/query.py, line 67
key = os.environ.get("DEEPBIOLOGY_API_KEY", "")
deepbiology_lab/mcp_server.py, line 87
api_key = os.environ.get("DEEPBIOLOGY_API_KEY") or ""
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.dockerignore, line 6
*.egg-info/
.dockerignore, line 7
.env
.dockerignore, line 9
!.env.example
.gitignore, line 9
!scripts/install.sh
.gitignore, line 10
.env
.gitignore, line 12
!.env.example
Agent instructions
Pass
No instruction to ignore earlier instructions or to hide a step.
Obfuscation
Concern
contains an encoded blob in a file that should be readable.
OBFUSCATION_ENCODED_BLOB
screenshot.md, line 84
"url": "https://storage.googleapis.com/deepbiology-471514.firebasestorage.app/job-results/ZWFyqihsxmWjroGFUe7MLKuoBn82/ddc08f1d8522235877e4e247c7ea0bea7b8d549878d3c52b333112090f79b
screenshot.md, line 103
"sequence": "GGAGAACCTTTCTCAGGAAGTCCCATTGCTGGGCTGGGCTGGGGGCCGCCTGGGCAGAGAGATAAGCTGCGCCGATGGGTCGGGAGCAGCAGCCTTGGTGGTTTTCTGCCGCCGAAGTCCTGGCCTGCAGGAAACCCCAGGGAGGACCCCTGCATCCTCTTTTACAG
screenshot.md, line 118
"sequence": "GGAGAACCTTTCTCAGGAAGTCCCATTGCTGGGCTGGGCTGGGGGCCGCCTGGGCAGAGAGATAAGCTGCGCCGATGGGTCGGGAGCAGCAGCCTTGGTGGTTTTCTGCCGCCGAAGTCCTGGCCTGCAGGAAACCCCAGGGAGGACCCCTGCATCCTCTTTTACAG
Licence
Pass
A licence file is present (LICENSE).
Maintainer activity
Pass
The latest commit is within the last 365 days.
Note
Hygiene check of commit a960bb51f252. can delete files. The docs document an installer that pipes a download into a shell. accepts a host from input, with no fixed list in this file. reads a credential or environment file. contains an encoded blob in a file that should be readable.
Date and source
Date checked:
github.com
Commit graded: a960bb51f2528d8a9917717e631d9eef97bba191
This link goes to the original host. PlugVet does not host or check what you download from there, and installing it is your own decision and risk.