Grades are a hygiene check, not a security guarantee.

MCP, MCP server

Knowledgebase Mcp

A Model Context Protocol (MCP) server for biomedical research that provides a standardized connection layer between artificial intelligence systems and biomedical resources.

Compatibility: Not stated.

Grade C

One Medium finding. Read the report before installing.

Graded by PlugVetRubric v2

Not a guarantee. A hygiene check of the source at the commit shown, not a security audit.

NETWORK_HOST_FROM_INPUT

Why this grade

  • NETWORK_HOST_FROM_INPUT Medium

    A file takes a URL or endpoint as input and has no fixed host list.

    src/biocontext_kb/core/alphafold/_get_alphafold_info_by_uniprot_id.py, line 28 response = requests.get(url)

Any High, or two or more Medium findings, give D. One Medium gives C. Low findings or a security Note give B. Each code names a finding behind the letter.

Grades are a hygiene check of the source at the commit shown, on the date checked, not a security audit or a guarantee. The free directory grades are automated. Before release, a PlugVet engineer reviews every paid report and any grade we hold back, including all F grades, against the source code and the evidence we quote.

What was checked

Plain notes from the hygiene checks.

  • Permissions

    Pass

    No shell or command execution found, and no extra permission was declared.

  • Install and update

    Pass

    No install-time script found, and dependencies are pinned or absent.

  • Network

    Serious

    accepts a host from input, with no fixed list in this file.

    NETWORK_HOST_FROM_INPUT

    src/biocontext_kb/core/alphafold/_get_alphafold_info_by_uniprot_id.py, line 28

    response = requests.get(url)

    src/biocontext_kb/core/antibodyregistry/_get_antibody_information.py, line 27

    response = requests.get(url, headers=headers)

    src/biocontext_kb/core/antibodyregistry/_get_antibody_list.py, line 35

    response = requests.get(url, params=params, headers=headers)

    Show more

    src/biocontext_kb/core/biorxiv/_get_preprint_details.py, line 39

    response = requests.get(url, timeout=30)

    src/biocontext_kb/core/biorxiv/_get_recent_biorxiv_preprints.py, line 81

    response = requests.get(base_url, params=params, timeout=30)

    src/biocontext_kb/core/clinicaltrials/_get_recruiting_studies_by_location.py, line 60

    response = requests.get(url)

    src/biocontext_kb/core/clinicaltrials/_get_studies_by_condition.py, line 50

    response = requests.get(url)

    src/biocontext_kb/core/clinicaltrials/_get_studies_by_intervention.py, line 61

    response = requests.get(url)

    src/biocontext_kb/openapi/_get_openapi_mcps.py, line 32

    schema_request = requests.get(schema["url"])

  • Secrets

    Concern

    reads a credential or environment file.

    SECRETS_PATH_UNCONFIRMED

    .dockerignore, line 7

    .DS_Store

    .gitignore, line 31

    # Environments

  • Agent instructions

    Pass

    No instruction to ignore earlier instructions or to hide a step.

  • Obfuscation

    Concern

    contains an encoded blob in a file that should be readable.

    OBFUSCATION_ENCODED_BLOB

    uv.lock, line 1

    version = 1

    docs/source/client_example.ipynb, line 1

    {

    src/biocontext_kb/core/panglaodb/data/PanglaoDB_markers_27_Mar_2020.tsv, line 1

    species official gene symbol cell type nicknames ubiquitousness index product description gene type canonical marker germ layer organ sensitivity_human sensitivity_mouse specificit

    Show more

    docs/source/client_example.ipynb, line 211

    "{'entryType': 'UniProtKB reviewed (Swiss-Prot)', 'primaryAccession': 'P04637', 'secondaryAccessions': ['Q15086', 'Q15087', 'Q15088', 'Q16535', 'Q16807', 'Q16808', 'Q16809', 'Q1681

  • Licence

    Pass

    A licence file is present (LICENSE).

  • Maintainer activity

    Pass

    The latest commit is within the last 365 days.

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Note

Hygiene check of commit 92518edf3371. accepts a host from input, with no fixed list in this file. reads a credential or environment file. contains an encoded blob in a file that should be readable.

Date and source

Date checked:

View source

github.com

Commit graded: 92518edf337196d4b4d445dc828dd957bf35d39c

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Read how this letter is chosen