MCP, MCP server
Pdb Mcp Server
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
Compatibility: Not stated.
Grade B
Minor issues only, no Medium or High. Worth a quick look at the findings below before installing.
Not a guarantee. A hygiene check of the source at the commit shown, not a security audit.
NETWORK_NO_FIXED_HOST
Why this grade
- NETWORK_NO_FIXED_HOST Low
Makes a network call whose host is not written as a fixed address.
src/index.ts, line 211
const response = await axios.get(`https://files.rcsb.org/download/${pdbId}.pdb`);
Any High, or two or more Medium findings, give D. One Medium gives C. Low findings or a security Note give B. Each code names a finding behind the letter.
Grades are a hygiene check of the source at the commit shown, on the date checked, not a security audit or a guarantee. The free directory grades are automated. Before release, a PlugVet engineer reviews every paid report and any grade we hold back, including all F grades, against the source code and the evidence we quote.
What was checked
Plain notes from the hygiene checks.
Permissions
Pass
No shell or command execution found, and no extra permission was declared.
Install and update
Pass
No install-time script found, and dependencies are pinned or absent.
Network
Concern
can reach a host that is not written as a fixed address.
NETWORK_NO_FIXED_HOST
src/index.ts, line 211
const response = await axios.get(`https://files.rcsb.org/download/${pdbId}.pdb`);
src/index.ts, line 454
const response = await axios.get(url);
src/index.ts, line 496
const response = await axios.get(url);
Secrets
Pass
No read of a credential file or secret environment variable found.
Agent instructions
Pass
No instruction to ignore earlier instructions or to hide a step.
Obfuscation
Pass
No encoded or minified payload found.
Licence
Pass
A licence file is present (LICENSE).
Maintainer activity
Pass
The latest commit is within the last 365 days.
Note
Hygiene check of commit d7f2d2584948. can reach a host that is not written as a fixed address.
Date and source
Date checked:
github.com
Commit graded: d7f2d258494877492f824a299134f30b8b76e950
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